Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8984913-SRR8984914/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  206,575,411
 Normal Paired: 194,523,337 (94.17%)
 Chimeric Paired: 7,902,537 (3.83%)
 Chimeric Ambiguous: 3,109,298 (1.51%)
 Unmapped: 1,040,239 (0.50%)
 Ligation Motif Present: 67,508 (0.03%)
Alignable (Normal+Chimeric Paired): 202,425,874 (97.99%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-30T21:23:15,438]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 96,463,539 (46.70%)
PCR Duplicates: 105,962,335 (51.29%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 117,394,051
Intra-fragment Reads: 45,970,252 (22.25% / 47.66%)
Below MAPQ Threshold: 20,026,595 (9.69% / 20.76%)
Hi-C Contacts: 30,466,692 (14.75% / 31.58%)
 Ligation Motif Present: 18,640  (0.01% / 0.02%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,655,970  (2.25% / 4.83%)
Intra-chromosomal: 25,810,722  (12.49% / 26.76%)
Short Range (<20Kb): 17,113,391  (8.28% / 17.74%)
Long Range (>20Kb): 8,697,241  (4.21% / 9.02%)